PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_07011A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LBD
Protein Properties Length: 297aa    MW: 31740.6 Da    PI: 6.5884
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_07011AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.75.9e-314106198
                     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 
                                +C++C+vlr++C+++Cv++p++     p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +PvyG+vg+
  Oropetium_20150105_07011A   4 SCNGCRVLRKGCSDNCVIRPCLqwirsPDAQGNATVFLAKFYGRAGLINLISAGPENVRPAIFRSLLYEACGRMLNPVYGSVGL 87 
                                6*************************99******************************************************** PP

                     DUF260  80 ilklqqqleqlkaelallk 98 
                                ++++++ql+q+++e +l++
  Oropetium_20150105_07011A  88 LWSGNWQLCQAAVENVLRG 106
                                ************9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9553109IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCV IRPCLQWIRS PDAQGNATVF LAKFYGRAGL INLISAGPEN  60
VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQAAV ENVLRGMPIT NSPPAACTAV  120
VPPLKTCDIR HVARRGGDHG DIIHRVDNSS RVQFKRQSGG AQKSGTAIEL VFSRPSSAVL  180
GDVWQAQPLS WAPAGGKPSP QEYSAASHDA VPETDSSDTS VDTVEVSHVS HQSDEPEAPP  240
ATDTDGREVV GLDLALGLLP TTAHKIEPSS DVDDDQHYHR GDPVNNIGLG VTAWRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1005021e-102FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673774.11e-124PREDICTED: LOB domain-containing protein 40-like
TrEMBLA0A096S6S61e-124A0A096S6S6_MAIZE; Uncharacterized protein
STRINGGRMZM2G132693_P011e-124(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.13e-71LOB domain-containing protein 42